Genome Insights of the Plant-Growth Promoting Bacterium Cronobacter muytjensii JZ38 With Volatile-Mediated Antagonistic Activity Against Phytophthora infestans.
Identifieur interne : 000189 ( Main/Exploration ); précédent : 000188; suivant : 000190Genome Insights of the Plant-Growth Promoting Bacterium Cronobacter muytjensii JZ38 With Volatile-Mediated Antagonistic Activity Against Phytophthora infestans.
Auteurs : Abdul Aziz Eida [Arabie saoudite] ; Salim Bougouffa [Arabie saoudite] ; Floriane L'Haridon [Suisse] ; Intikhab Alam [Arabie saoudite] ; Laure Weisskopf [Suisse] ; Vladimir B. Bajic [Arabie saoudite] ; Maged M. Saad [Arabie saoudite] ; Heribert Hirt [Arabie saoudite, Autriche]Source :
- Frontiers in microbiology [ 1664-302X ] ; 2020.
Abstract
Salinity stress is a major challenge to agricultural productivity and global food security in light of a dramatic increase of human population and climate change. Plant growth promoting bacteria can be used as an additional solution to traditional crop breeding and genetic engineering. In the present work, the induction of plant salt tolerance by the desert plant endophyte Cronobacter sp. JZ38 was examined on the model plant Arabidopsis thaliana using different inoculation methods. JZ38 promoted plant growth under salinity stress via contact and emission of volatile compounds. Based on the 16S rRNA and whole genome phylogenetic analysis, fatty acid analysis and phenotypic identification, JZ38 was identified as Cronobacter muytjensii and clearly separated and differentiated from the pathogenic C. sakazakii. Full genome sequencing showed that JZ38 is composed of one chromosome and two plasmids. Bioinformatic analysis and bioassays revealed that JZ38 can grow under a range of abiotic stresses. JZ38 interaction with plants is correlated with an extensive set of genes involved in chemotaxis and motility. The presence of genes for plant nutrient acquisition and phytohormone production could explain the ability of JZ38 to colonize plants and sustain plant growth under stress conditions. Gas chromatography-mass spectrometry analysis of volatiles produced by JZ38 revealed the emission of indole and different sulfur volatile compounds that may play a role in contactless plant growth promotion and antagonistic activity against pathogenic microbes. Indeed, JZ38 was able to inhibit the growth of two strains of the phytopathogenic oomycete Phytophthora infestans via volatile emission. Genetic, transcriptomic and metabolomics analyses, combined with more in vitro assays will provide a better understanding the highlighted genes' involvement in JZ38's functional potential and its interaction with plants. Nevertheless, these results provide insight into the bioactivity of C. muytjensii JZ38 as a multi-stress tolerance promoting bacterium with a potential use in agriculture.
DOI: 10.3389/fmicb.2020.00369
PubMed: 32218777
PubMed Central: PMC7078163
Affiliations:
- Arabie saoudite, Autriche, Suisse
- Canton de Fribourg, Vienne (Autriche)
- Fribourg, Vienne (Autriche)
- Université de Fribourg
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Bajic</name><affiliation wicri:level="1"><nlm:affiliation>Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.</nlm:affiliation><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea>Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal</wicri:regionArea><wicri:noRegion>Thuwal</wicri:noRegion></affiliation></author><author><name sortKey="Saad, Maged M" sort="Saad, Maged M" uniqKey="Saad M" first="Maged M" last="Saad">Maged M. Saad</name><affiliation wicri:level="1"><nlm:affiliation>DARWIN21, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.</nlm:affiliation><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea>DARWIN21, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal</wicri:regionArea><wicri:noRegion>Thuwal</wicri:noRegion></affiliation></author><author><name sortKey="Hirt, Heribert" sort="Hirt, Heribert" uniqKey="Hirt H" first="Heribert" last="Hirt">Heribert Hirt</name><affiliation wicri:level="1"><nlm:affiliation>DARWIN21, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.</nlm:affiliation><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea>DARWIN21, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal</wicri:regionArea><wicri:noRegion>Thuwal</wicri:noRegion></affiliation><affiliation wicri:level="3"><nlm:affiliation>Max F. Perutz Laboratories, University of Vienna, Vienna, Austria.</nlm:affiliation><country xml:lang="fr">Autriche</country><wicri:regionArea>Max F. Perutz Laboratories, University of Vienna, Vienna</wicri:regionArea><placeName><settlement type="city">Vienne (Autriche)</settlement><region nuts="2" type="province">Vienne (Autriche)</region></placeName></affiliation></author></analytic><series><title level="j">Frontiers in microbiology</title><idno type="ISSN">1664-302X</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Salinity stress is a major challenge to agricultural productivity and global food security in light of a dramatic increase of human population and climate change. Plant growth promoting bacteria can be used as an additional solution to traditional crop breeding and genetic engineering. In the present work, the induction of plant salt tolerance by the desert plant endophyte <i>Cronobacter</i> sp. JZ38 was examined on the model plant <i>Arabidopsis thaliana</i> using different inoculation methods. JZ38 promoted plant growth under salinity stress via contact and emission of volatile compounds. Based on the 16S rRNA and whole genome phylogenetic analysis, fatty acid analysis and phenotypic identification, JZ38 was identified as <i>Cronobacter muytjensii</i> and clearly separated and differentiated from the pathogenic <i>C. sakazakii</i>. Full genome sequencing showed that JZ38 is composed of one chromosome and two plasmids. Bioinformatic analysis and bioassays revealed that JZ38 can grow under a range of abiotic stresses. JZ38 interaction with plants is correlated with an extensive set of genes involved in chemotaxis and motility. The presence of genes for plant nutrient acquisition and phytohormone production could explain the ability of JZ38 to colonize plants and sustain plant growth under stress conditions. Gas chromatography-mass spectrometry analysis of volatiles produced by JZ38 revealed the emission of indole and different sulfur volatile compounds that may play a role in contactless plant growth promotion and antagonistic activity against pathogenic microbes. Indeed, JZ38 was able to inhibit the growth of two strains of the phytopathogenic oomycete <i>Phytophthora infestans</i> via volatile emission. Genetic, transcriptomic and metabolomics analyses, combined with more <i>in vitro</i> assays will provide a better understanding the highlighted genes' involvement in JZ38's functional potential and its interaction with plants. Nevertheless, these results provide insight into the bioactivity of <i>C. muytjensii</i> JZ38 as a multi-stress tolerance promoting bacterium with a potential use in agriculture.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32218777</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>28</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-302X</ISSN><JournalIssue CitedMedium="Print"><Volume>11</Volume><PubDate><Year>2020</Year></PubDate></JournalIssue><Title>Frontiers in microbiology</Title><ISOAbbreviation>Front Microbiol</ISOAbbreviation></Journal><ArticleTitle>Genome Insights of the Plant-Growth Promoting Bacterium <i>Cronobacter muytjensii</i> JZ38 With Volatile-Mediated Antagonistic Activity Against <i>Phytophthora infestans</i>.</ArticleTitle><Pagination><MedlinePgn>369</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fmicb.2020.00369</ELocationID><Abstract><AbstractText>Salinity stress is a major challenge to agricultural productivity and global food security in light of a dramatic increase of human population and climate change. Plant growth promoting bacteria can be used as an additional solution to traditional crop breeding and genetic engineering. In the present work, the induction of plant salt tolerance by the desert plant endophyte <i>Cronobacter</i> sp. JZ38 was examined on the model plant <i>Arabidopsis thaliana</i> using different inoculation methods. JZ38 promoted plant growth under salinity stress via contact and emission of volatile compounds. Based on the 16S rRNA and whole genome phylogenetic analysis, fatty acid analysis and phenotypic identification, JZ38 was identified as <i>Cronobacter muytjensii</i> and clearly separated and differentiated from the pathogenic <i>C. sakazakii</i>. Full genome sequencing showed that JZ38 is composed of one chromosome and two plasmids. Bioinformatic analysis and bioassays revealed that JZ38 can grow under a range of abiotic stresses. JZ38 interaction with plants is correlated with an extensive set of genes involved in chemotaxis and motility. The presence of genes for plant nutrient acquisition and phytohormone production could explain the ability of JZ38 to colonize plants and sustain plant growth under stress conditions. Gas chromatography-mass spectrometry analysis of volatiles produced by JZ38 revealed the emission of indole and different sulfur volatile compounds that may play a role in contactless plant growth promotion and antagonistic activity against pathogenic microbes. Indeed, JZ38 was able to inhibit the growth of two strains of the phytopathogenic oomycete <i>Phytophthora infestans</i> via volatile emission. Genetic, transcriptomic and metabolomics analyses, combined with more <i>in vitro</i> assays will provide a better understanding the highlighted genes' involvement in JZ38's functional potential and its interaction with plants. Nevertheless, these results provide insight into the bioactivity of <i>C. muytjensii</i> JZ38 as a multi-stress tolerance promoting bacterium with a potential use in agriculture.</AbstractText><CopyrightInformation>Copyright © 2020 Eida, Bougouffa, L’Haridon, Alam, Weisskopf, Bajic, Saad and Hirt.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Eida</LastName><ForeName>Abdul Aziz</ForeName><Initials>AA</Initials><AffiliationInfo><Affiliation>DARWIN21, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bougouffa</LastName><ForeName>Salim</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>BioScience Core Lab, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>L'Haridon</LastName><ForeName>Floriane</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Fribourg, Fribourg, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Alam</LastName><ForeName>Intikhab</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Weisskopf</LastName><ForeName>Laure</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Fribourg, Fribourg, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bajic</LastName><ForeName>Vladimir B</ForeName><Initials>VB</Initials><AffiliationInfo><Affiliation>Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Saad</LastName><ForeName>Maged M</ForeName><Initials>MM</Initials><AffiliationInfo><Affiliation>DARWIN21, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hirt</LastName><ForeName>Heribert</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>DARWIN21, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Max F. Perutz Laboratories, University of Vienna, Vienna, Austria.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>03</Month><Day>11</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Microbiol</MedlineTA><NlmUniqueID>101548977</NlmUniqueID><ISSNLinking>1664-302X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Phytophthora infestans</Keyword><Keyword MajorTopicYN="N">abiotic stress</Keyword><Keyword MajorTopicYN="N">biocontrol</Keyword><Keyword MajorTopicYN="N">desert bacteria</Keyword><Keyword MajorTopicYN="N">genome</Keyword><Keyword MajorTopicYN="N">plant growth promotion</Keyword><Keyword MajorTopicYN="N">volatile compounds</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>07</Month><Day>12</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>02</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>3</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>3</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>3</Month><Day>29</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32218777</ArticleId><ArticleId IdType="doi">10.3389/fmicb.2020.00369</ArticleId><ArticleId IdType="pmc">PMC7078163</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Front Microbiol. 2015 Nov 17;6:1282</Citation><ArticleIdList><ArticleId 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last="Alam">Intikhab Alam</name><name sortKey="Bajic, Vladimir B" sort="Bajic, Vladimir B" uniqKey="Bajic V" first="Vladimir B" last="Bajic">Vladimir B. Bajic</name><name sortKey="Bougouffa, Salim" sort="Bougouffa, Salim" uniqKey="Bougouffa S" first="Salim" last="Bougouffa">Salim Bougouffa</name><name sortKey="Bougouffa, Salim" sort="Bougouffa, Salim" uniqKey="Bougouffa S" first="Salim" last="Bougouffa">Salim Bougouffa</name><name sortKey="Hirt, Heribert" sort="Hirt, Heribert" uniqKey="Hirt H" first="Heribert" last="Hirt">Heribert Hirt</name><name sortKey="Saad, Maged M" sort="Saad, Maged M" uniqKey="Saad M" first="Maged M" last="Saad">Maged M. Saad</name></country><country name="Suisse"><region name="Canton de Fribourg"><name sortKey="L Haridon, Floriane" sort="L Haridon, Floriane" uniqKey="L Haridon F" first="Floriane" last="L'Haridon">Floriane L'Haridon</name></region><name sortKey="Weisskopf, Laure" sort="Weisskopf, Laure" uniqKey="Weisskopf L" first="Laure" last="Weisskopf">Laure Weisskopf</name></country><country name="Autriche"><region name="Vienne (Autriche)"><name sortKey="Hirt, Heribert" sort="Hirt, Heribert" uniqKey="Hirt H" first="Heribert" last="Hirt">Heribert Hirt</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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